publications

Recent publications.

2022

  1. Prioritizing Colombian plant genetic resources for investment in research using indicators about the geographic origin, vulnerability status, economic benefits, and food security importance
    Cerón-Souza, Ivania, Delgadillo-Duran, Diego A, Polo-Murcia, Sonia M, Sarmiento-Naizaque, Zaida X, and Reyes-Herrera, Paula H
    2022
  2. Robust and efficient software for reference-free genomic diversity analysis of genotyping-by-sequencing data on diploid and polyploid species
    Parra-Salazar, Andrea, Gomez, Jorge, Lozano-Arce, Daniela, Reyes-Herrera, Paula H, and Duitama, Jorge
    Molecular Ecology Resources 2022
  3. Vis–NIR spectroscopy and machine learning methods to diagnose chemical properties in Colombian sugarcane soils
    Delgadillo-Duran, Diego A., Vargas-García, Cesar A., Varón-Ramírez, Viviana M., Calderón, Francisco, Montenegro, Andrea C., and Reyes-Herrera, Paula H.
    Geoderma Regional 2022

2021

  1. MultiGWAS: An integrative tool for Genome Wide Association Studies in tetraploid organisms
    Garreta, Luis, Cerón-Souza, Ivania, Palacio, Manfred Ricardo, and Reyes-Herrera, Paula H
    Ecology and Evolution 2021

2020

  1. Inheritance of rootstock effects in avocado (Persea americana Mill.) cv. Hass
    Reyes-Herrera, Paula H, Muñoz-Baena, Laura, Velásquez-Zapata, Valeria, Patiño, Laura, Delgado-Paz, Oscar A, Dı́az-Diez, Cipriano A, Navas-Arboleda, Alejandro A, and Cortés, Andrés J
    Frontiers in plant science 2020
  2. Robust and efficient software for reference-free genomic diversity analysis of GBS data on diploid and polyploid species
    Parra-Salazar, Andrea, Gomez, Jorge, Lozano-Arce, Daniela, Reyes-Herrera, Paula H, and Duitama, Jorge
    bioRxiv 2020

2015

  1. Predicting RAD-seq marker numbers across the eukaryotic tree of life
    Herrera, Santiago, Reyes-Herrera, Paula H, and Shank, Timothy M
    Genome Biology and Evolution 2015
  2. BackCLIP: a tool to identify common background presence in PAR-CLIP datasets
    Reyes-Herrera, Paula Helena, Speck-Hernandez, CA, Sierra, CA, and Herrera, S
    Bioinformatics 2015
  3. Predicting genome sizes and restriction enzyme recognition-sequence probabilities across the eukaryotic tree of life
    Herrera, Santiago, Reyes-Herrera, Paula H, and Shank, Timothy M
    bioRxiv 2015

2014

  1. Computational methods for CLIP-seq data processing
    Reyes-Herrera, Paula H, and Ficarra, Elisa
    Bioinformatics and Biology insights 2014
  2. Genome-wide predictability of restriction sites across the eukaryotic tree of life
    Herrera, Santiago, Reyes-Herrera, Paula H, and Shank, Timothy M
    bioRxiv 2014

2011

  1. miREE: miRNA recognition elements ensemble
    Reyes-Herrera, Paula H, Ficarra, Elisa, Acquaviva, Andrea, and Macii, Enrico
    Bmc Bioinformatics 2011

2010

  1. MicroRNA Target Prediction and Exploration through Candidate Binding Sites Generation
    Reyes-Herrera, Paula Helena, Acquaviva, Andrea, Ficarra, Elisa, and Macii, Enrico
    In 2010 International Conference on Complex, Intelligent and Software Intensive Systems 2010

2009

  1. Novel Method for MicroRNA Target Prediction Using a Genetic Algorithm
    Reyes Herrera, Paula Helena, Acquaviva, Andrea, Ficarra, Elisa, and Macii, Enrico
    In 7th Rocky Mountain Bioinformatics Conference 2009